Associated Genetic Biomarkers

Overview

Gene Location [1]
17q11.2
Pathway
Receptor tyrosine kinase/growth factor signaling
Variant Type
Loss
Gene
NF1

NF1 Loss is present in 0.28% of AACR GENIE cases, with breast invasive ductal carcinoma, high grade ovarian serous adenocarcinoma, mucosal melanoma of the head and neck, vulvar/vaginal mucosal melanoma, and osteosarcoma having the greatest prevalence [4].

Top Disease Cases with NF1 Loss

Significance of NF1 Loss in Diseases

Malignant Solid Tumor +

Non-Small Cell Lung Carcinoma +

Melanoma +

Ovarian Carcinoma +

Breast Carcinoma +

Colorectal Carcinoma +

Multiple Myeloma +

Pancreatic Carcinoma +

Sarcoma +

Glioblastoma +

Anaplastic Astrocytoma +

B-Cell Non-Hodgkin Lymphoma +

Bladder Carcinoma +

Endometrial Carcinoma +

Head And Neck Carcinoma +

Hepatocellular Carcinoma +

Low Grade Glioma +

Lymphoma +

Neuroblastoma +

Renal Cell Carcinoma +

Squamous Cell Lung Carcinoma +

Thyroid Gland Carcinoma +

References

1. Hart R and Prlic A. Universal Transcript Archive Repository. Version uta_20180821. San Francisco CA: Github;2015. https://github.com/biocommons/uta

2. The UniProt Consortium. UniProt: a worldwide hub of protein knowledge. Nucleic Acids Research. 2019;47:D506-D515.

3. Liu X, Wu C, Li C, and Boerwinkle E. dbNSFP v3.0: A one-stop database of functional predictions and annotations for human nonsynonymous and splice site SNVs. Human Mutation. 2015;37:235-241.

Liu X, Jian X, and Boerwinkle E. dbNSFP: A lightweight database of human nonsynonymous SNPs and their functional predictions. Human Mutation. 2011;32:894-899.

4. The AACR Project GENIE Consortium. AACR Project GENIE: powering precision medicine through an international consortium. Cancer Discovery. 2017;7(8):818-831. Dataset Version 6. This dataset does not represent the totality of the genetic landscape; see paper for more information.

5. All assertions and clinical trial landscape data are curated from primary sources. You can read more about the curation process here.